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Table 1 Accuracy of the six error correction methods on the 100 million simulated reads

From: Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads

Program k Recall Precision F-score Run time Memory
      (min) (GB)
SEECER 31 87.13 96.93 91.77 177 61
HShrec - 69.53 31.74 43.58 13641 30
Coral 31 58.35 85.14 69.25 1391 81
Musket 27 78.24 96.90 86.58 152 4
BFC 27 80.45 97.91 88.32 111 6
Rcorrector 27 88.94 99.84 94.07 118 5
  1. Best performers in each category are highlighted in italic. All programs were run multithreaded, with eight threads
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ISSN: 2047-217X

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