Table 2 Accuracy of six error correction methods on 100 million simulated reads, by expression level of transcripts. k-mer sizes used are those in Table 1
From: Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
| Program | Recall | Precision | F-score |
|---|---|---|---|
| Low expression | |||
| SEECER | 32.78 | 90.54 | 48.14 |
| HShrec | 24.77 | 0.81 | 1.56 |
| Coral | 31.88 | 64.60 | 42.69 |
| Musket | 13.88 | 33.94 | 19.71 |
| BFC | 25.18 | 58.37 | 35.19 |
| Rcorrector | 39.40 | 86.62 | 54.16 |
| Medium expression | |||
| SEECER | 86.58 | 97.05 | 91.51 |
| HShrec | 70.57 | 19.57 | 30.64 |
| Coral | 89.07 | 85.12 | 87.05 |
| Musket | 72.02 | 92.16 | 80.86 |
| BFC | 89.12 | 96.88 | 92.84 |
| Rcorrector | 87.73 | 99.66 | 93.31 |
| High expression | |||
| SEECER | 87.39 | 96.90 | 91.90 |
| HShrec | 69.22 | 41.67 | 52.02 |
| Coral | 47.59 | 85.17 | 61.06 |
| Musket | 80.50 | 98.53 | 88.61 |
| BFC | 77.47 | 98.35 | 86.67 |
| Rcorrector | 89.42 | 99.91 | 94.37 |