Table 4 Execution times (in seconds) for the analysis of simulated datasets using OmegaPlus, SweeD, SweepFinder, and selscan (iHs)
From: Scalable linkage-disequilibrium-based selective sweep detection: a performance guide
| Sequences | SNPs | Threads | OmegaPlus | SweeD | SweepFinder | Selscan (iHS) |
|---|---|---|---|---|---|---|
| 100 | 10,000 | 1 | 5.7 | 124.7 | 540.4 | 858.5 |
| 32 | 0.7 | 4.7 | – | 38.6 | ||
| 100,000 | 1 | 652.9 | 1,169.0 | 4,138.1 | 57,996.9 | |
| 32 | 21.7 | 36.3 | – | 2,442.1 | ||
| 1,000 | 10,000 | 1 | 7.1 | 283.5 | 132,938.2 | 37,340.9 |
| 32 | 1.3 | 60.6 | – | 1,428.8 | ||
| 100,000 | 1 | 753.1 | 1,345.5 | 135,996.3 | 433,811.2 | |
| 32 | 28.8 | 74.7 | – | 14,834.2 |