Table 1 Details of sequencing libraries
| Sample type | Label | Washing protocol | Number of read pairs |
|---|---|---|---|
| Clinical isolate | Patient A | - | 53,699,468 |
| Clinical isolate | Patient B | - | 45,851,518 |
| Lab model | Pig Unwashed | - | 59,011,146 |
| Lab model | Pig Washed 1 | Paraformaldehyde | 62,090,067 |
| Lab model | Pig Washed 2 | Lysozyme | 56,485,415 |
| Lab model | Pig Washed 3 | Bleach | 55,580,620 |