Table 3 Species level profiling for a ‘ladder’ synthetic community
From: INC-Seq: accurate single molecule reads using nanopore sequencing
| Species | Relative abundances | |
|---|---|---|
| Defined | INC-Seq | |
| Staphylococcus aureus | 0.362 | 0.631 |
| Streptococcus pyogenes | 0.320 | 0.148 |
| Helicobacter pylori | 0.160 | 0.096 |
| Fusobacterium nucleatum | 0.080 | 0.037 |
| Bifidobacterium longum | 0.040 | 0.042 |
| Klebsiella pneumoniae | 0.020 | 0.009 |
| Salmonella typhimurium | 0.010 | 0.022 |
| Staphylococcus epidermidis | 0.005 | 0.007 |
| Neisseria subflava | 0.002 | 0.004 |
| Faecalibacterium prausnitzii | 0.001 | 0.002 |